Index

A

are_genes_in_api() (in module cmapPy.clue_api_client.gene_queries) assemble_common_meta() (in module cmapPy.pandasGEXpress.concat)

assemble_concatenated_meta() (in module cmapPy.pandasGEXpress.concat) assemble_data() (in module cmapPy.pandasGEXpress.concat)

B

build_common_all_meta_df() (in module cmapPy.pandasGEXpress.concat)

build_mismatched_common_meta_report() (in module cmapPy.pandasGEXpress.concat) build_parser() (in module cmapPy.pandasGEXpress.subset)

C

ClueApiClient (class in cmapPy.clue_api_client.clue_api_client) cmapPy.clue_api_client.cell_queries (module) cmapPy.clue_api_client.clue_api_client (module) cmapPy.clue_api_client.gene_queries (module) cmapPy.clue_api_client.macchiato_queries (module) cmapPy.clue_api_client.pert_queries (module)

cmapPy.pandasGEXpress.concat (module) cmapPy.pandasGEXpress.gct2gctx (module) cmapPy.pandasGEXpress.gctx2gct (module) cmapPy.pandasGEXpress.random_slice (module) cmapPy.pandasGEXpress.subset (module) concat_main() (in module cmapPy.pandasGEXpress.concat)

D

do_reset_ids() (in module cmapPy.pandasGEXpress.concat)

G

gct2gctx_main() (in module cmapPy.pandasGEXpress.gct2gctx) GCToo (class in cmapPy.pandasGEXpress.GCToo)

gctx2gct_main() (in module cmapPy.pandasGEXpress.gctx2gct) get_file_list() (in module cmapPy.pandasGEXpress.concat)

H

hstack() (in module cmapPy.pandasGEXpress.concat)

M

make_specified_size_gctoo() (in module cmapPy.pandasGEXpress.random_slice)

MismatchCommonMetadataConcatException

P

parse() (in module cmapPy.pandasGEXpress.parse)

R

read() (in module cmapPy.set_io.gmt) (in module cmapPy.set_io.grp)

reset_ids_in_meta_df() (in module cmapPy.pandasGEXpress.concat) run_count_query() (cmapPy.clue_api_client.clue_api_client.ClueApiClient method) run_filter_query() (cmapPy.clue_api_client.clue_api_client.ClueApiClient method)

S

subset_main() (in module cmapPy.pandasGEXpress.subset)

V

verify_gmt_integrity() (in module cmapPy.set_io.gmt)

vstack() (in module cmapPy.pandasGEXpress.concat)

W

write() (in module cmapPy.pandasGEXpress.write_gct) (in module cmapPy.pandasGEXpress.write_gctx) (in module cmapPy.set_io.gmt) (in module cmapPy.set_io.grp)