Available Modules¶
clue_api_client¶
A Python client for easy interaction with the Connectivity Map (CLUE) API.
Maintainer: David Lahr, dlahr@broadinstitute.org
pandasGEXpress¶
A package (integrated with Python’s pandas package) allowing users to easily read, modify, and write .gct and .gctx files.
Also features the following command-line tools:
gct2gctx
: converts .gct to .gctx file. Typegct2gctx -h
for help.
gctx2gct
: converts .gctx to .gct file. Typegctx2gct -h
for help.
concat
: Concats two or more .gct/x files as specified by user. Typeconcat -h
for help.Maintainer: Oana Enache, oana@broadinstitute.org
set_io¶
set_io contains simple scripts for parsing two other common file types used by the Connectivity Map: GRP and GMT files. The GRP file is used for storing a single set of things (e.g. a single gene set), while the GMT file is used for storing multiple sets of things (e.g. several gene sets).
Maintainer: Lev Litichevskiy, lev@broadinstitute.org